Chinese Spring bread wheat genome sequence IWGSC RefSeqv1.0

This directory contains annotation and sequence data files from the bread wheat (Chinese Spring) IWGSC RefSeqv1.0 assembly version 1. Files are formatted for visualization in Integrated Genome Browser (IGB).

Files include:

• 2bit file - sequence file in two-bit format, created using faToTwoBit. When users click Load Sequence buttons, IGB retrieves sequence data from this file. The 2bit file name must match the genome version. To obtain a copy of faToTwoBit, visit http://hgdownload.cse.ucsc.edu/admin/exe/.
• annots.xml - meta-data file that lists available data sets and specifies how they will look once loaded into Integrated Genome Browser.
• genome.txt - meta-data file that lists genomic sequences and their sizes, created using twoBitInfo using the 2bit file. To obtain a copy of twoBitInfo, visit http://hgdownload.cse.ucsc.edu/admin/exe/
• reference gene model annotations in bed or bed detail format, compressed using bgzip and indexed using tabix (See: Tabix: fast retrieval of sequence features from generic TAB-delimited files and http://genome.ucsc.edu/FAQ/FAQformat.html.)

Note: Gene model annotation files have been re-formatted for fast transfer over the internet and for visualization in IGB.

For more information about quickload, visit bioviz.org and visit the on-line, searchable IGB User's Guide.

	Name	Last modified	Size	Description
	Parent Directory		-
	T_aestivum_Aug_2018.2bit	2020-09-23 23:45	3.5G	Sequence data in blat 2bit format
	T_aestivum_Aug_2018.bed	2023-06-16 14:13	24M	Annotation or junction file
	T_aestivum_Aug_2018.bed.gz	2023-06-16 14:12	6.2M	Annotation or junction file
	T_aestivum_Aug_2018.bed.gz.csi	2023-06-16 14:12	663K	Annotation or junction file
	annots.xml	2023-06-16 14:13	289	Annotation and data file list
	genome.txt	2023-06-16 14:12	286	Chromosome lengths and assembly information