Mus musculus (Jul 2007) mouse (NCBI37/mm9) genome assembly
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.
Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.
The file named M_musculus_Jul_2007.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from M_musculus_Jul_2007.2bit sequence file using twoBitInfo.
Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.
![[ICO]](/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/icons/compressed.gif){kind=icon} | M_musculus_Jul_2007_all_est.psl.gz | 2023-06-16 14:32 | 177M | PSL (alignments) blat output file |
![[ ]](/styling/icons/glyphicon-file.svg){kind=icon} | M_musculus_Jul_2007_all_est.psl.gz.tbi | 2023-06-16 14:32 | 1.0M | Tabix index file |
| M_musculus_Jul_2007_all_mrna.psl.gz | 2023-06-16 14:32 | 12M | PSL (alignments) blat output file |
| M_musculus_Jul_2007_all_mrna.psl.gz.tbi | 2023-06-16 14:32 | 466K | Tabix index file |
| M_musculus_Jul_2007_refGene.bed.gz | 2023-06-16 14:32 | 2.1M | Data from UCSC refGene table |
| M_musculus_Jul_2007_refGene.bed.gz.tbi | 2023-06-16 14:32 | 193K | Tabix index file |
| annots.xml | 2025-03-11 10:01 | 1.2K | Annotation and data file list |
| genome.txt | 2023-06-16 14:32 | 584 | Chromosome lengths and assembly information |