Homo sapiens (May 2004) human being (NCBI35/hg17) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named H_sapiens_May_2004.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from H_sapiens_May_2004.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]genome.txt2023-06-16 14:12 792 Chromosome lengths and assembly information
[   ]H_sapiens_May_2004_refGene.bed.gz2023-06-16 14:12 2.6MData from UCSC refGene table
[   ]H_sapiens_May_2004_refGene.bed.gz.tbi2023-06-16 14:12 209KTabix index file
[   ]H_sapiens_May_2004.2bit2023-06-16 14:12 767MSequence data in blat 2bit format
[   ]cytoBand.cyt2023-06-16 14:12 30KCytobands file
[   ]annots.xml2023-06-16 14:12 481 Annotation and data file list
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