Homo sapiens (Feb 2009) human being (GRCh37/hg19) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named H_sapiens_Feb_2009.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from H_sapiens_Feb_2009.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

	Name	Last modified	Size	Description
	Parent Directory		-
	H_sapiens_Feb_2009_all_est.psl.gz	2023-06-16 14:05	368M	PSL (alignments) blat output file
	H_sapiens_Feb_2009_all_est.psl.gz.tbi	2023-06-16 14:05	1.4M	Tabix index file
	H_sapiens_Feb_2009_all_mrna.psl.gz	2023-06-16 14:05	16M	PSL (alignments) blat output file
	H_sapiens_Feb_2009_all_mrna.psl.gz.tbi	2023-06-16 14:05	459K	Tabix index file
	H_sapiens_Feb_2009_refGene.bed.gz	2023-06-16 14:05	2.7M	Data from UCSC refGene table
	H_sapiens_Feb_2009_refGene.bed.gz.tbi	2023-06-16 14:05	210K	Tabix index file
	annots.xml	2025-03-11 10:01	1.7K	Annotation and data file list
	cytoBand.cyt	2023-06-16 14:05	30K	Cytobands file
	genome.txt	2023-06-16 14:05	1.9K	Chromosome lengths and assembly information
	hg19-blacklist.v2.bed.gz	2023-06-16 14:05	7.6K	Annotation or junction file
	hg19-blacklist.v2.bed.gz.tbi	2023-06-16 14:05	12K	Tabix index file