Felis catus (Sep 2011) cat (ICGSC Felis_catus 6.2/felCat5) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named F_catus_Sep_2011.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from F_catus_Sep_2011.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

	Name	Last modified	Size	Description
	Parent Directory		-
	annots.xml	2025-03-11 10:01	1.2K	Annotation and data file list
	F_catus_Sep_2011_refGene.bed	2023-06-16 14:19	59K	Annotation or junction file
	genome.txt	2023-06-16 14:19	112K	Chromosome lengths and assembly information
	F_catus_Sep_2011_refGene.bed.gz	2023-06-16 14:19	25K	Data from UCSC refGene table
	F_catus_Sep_2011_all_est.psl.gz	2023-06-16 14:19	38K	PSL (alignments) blat output file
	F_catus_Sep_2011_all_mrna.psl.gz	2023-06-16 14:19	191K	PSL (alignments) blat output file
	F_catus_Sep_2011_all_est.psl.gz.tbi	2023-06-16 14:19	12K	Tabix index file
	F_catus_Sep_2011_all_mrna.psl.gz.tbi	2023-06-16 14:19	25K	Tabix index file
	F_catus_Sep_2011_refGene.bed.gz.tbi	2023-06-16 14:19	7.3K	Tabix index file