Equus caballus (Sep 2007) horse (equCab2) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named E_caballus_Sep_2007.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from E_caballus_Sep_2007.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[   ]E_caballus_Sep_2007.2bit2023-06-16 13:24 617MSequence data in blat 2bit format
[   ]E_caballus_Sep_2007_all_est.psl.gz2023-06-16 13:24 1.5MPSL (alignments) blat output file
[   ]E_caballus_Sep_2007_all_est.psl.gz.tbi2023-06-16 13:24 126KTabix index file
[   ]E_caballus_Sep_2007_all_mrna.psl.gz2023-06-16 13:24 1.4MPSL (alignments) blat output file
[   ]E_caballus_Sep_2007_all_mrna.psl.gz.tbi2023-06-16 13:24 168KTabix index file
[   ]E_caballus_Sep_2007_refGene.bed.gz2023-06-16 13:24 67KData from UCSC refGene table
[   ]E_caballus_Sep_2007_refGene.bed.gz.tbi2023-06-16 13:24 15KTabix index file
[   ]annots.xml2023-06-16 13:24 1.0KAnnotation and data file list
[TXT]genome.txt2023-06-16 13:24 502 Chromosome lengths and assembly information
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