Danio rerio (May 2017) zebrafish (GRCz11/danRer11) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named D_rerio_May_2017.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from D_rerio_May_2017.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

	Name	Last modified	Size	Description
	Parent Directory		-
	D_rerio_May_2017_refGene.bed.gz	2023-06-16 13:45	1.5M	Data from UCSC refGene table
	D_rerio_May_2017_refGene.bed.gz.tbi	2023-06-16 13:45	81K	Tabix index file
	annots.xml	2025-03-11 10:01	555	Annotation and data file list
	genome.txt	2023-06-16 13:45	47K	Chromosome lengths and assembly information