Drosophila melanogaster (Jul 2014) fruit fly (dmel_r6.03_FB2014_06/BDGP6) genome assembly
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
The gene model annotation file (D_melanogaster_Jul_2014.bed.gz) was made from a GTF file downloaded Nov. 22, 2014 from ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06 /gtf.
The file named D_melanogaster_Jul_2014.2bit contains sequence data. It was made from fasta file named dmel-all-chromosome-r6.03.fasta.gz downloaded from ftp://ftp.flybase.net/genomes/Drosophila_melanogaster/dmel_r6.03_FB2014_06/fasta. To convert it back to fasta, use twoBitToFa.
The file genome.txt lists sequences and their sizes and was made from D_melanogaster_Jul_2014.2bit sequence file using twoBitInfo.For more information, see this post at LoraineLab.org.
You can get twoBitInfo, twoBitToFa, faToTwoBit, and related programs from http://hgdownload.cse.ucsc.edu/admin/exe/.
![[ICO]](/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/styling/icons/glyphicon-file.svg){kind=icon} | D_melanogaster_Jul_2014.2bit | 2023-06-16 13:49 | 34M | Sequence data in blat 2bit format |
![[ ]](/icons/compressed.gif){kind=icon} | D_melanogaster_Jul_2014.bed.gz | 2023-06-16 13:49 | 1.1M | Annotation or junction file |
| D_melanogaster_Jul_2014.bed.gz.tbi | 2023-06-16 13:49 | 60K | Tabix index file |
| D_melanogaster_Jul_2014_ensGene.bed.gz | 2023-06-16 13:49 | 1.3M | Annotation or junction file |
| D_melanogaster_Jul_2014_ensGene.bed.gz.tbi | 2023-06-16 13:49 | 17K | Tabix index file |
| annots.xml | 2023-06-16 13:49 | 822 | Annotation and data file list |
| genome.txt | 2023-06-16 13:49 | 39K | Chromosome lengths and assembly information |