Cavia porcellus (Feb 2008) guinea pig (cavPor3) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named C_porcellus_Feb_2008.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from C_porcellus_Feb_2008.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[   ]annots.xml2023-06-16 14:24 1.0KAnnotation and data file list
[   ]C_porcellus_Feb_2008_refGene.bed.gz.tbi2023-06-16 14:24 8.5KTabix index file
[   ]C_porcellus_Feb_2008_all_mrna.psl.gz.tbi2023-06-16 14:24 11KTabix index file
[   ]C_porcellus_Feb_2008_refGene.bed.gz2023-06-16 14:24 30KData from UCSC refGene table
[   ]C_porcellus_Feb_2008_all_mrna.psl.gz2023-06-16 14:24 60KPSL (alignments) blat output file
[TXT]genome.txt2023-06-16 14:24 60KChromosome lengths and assembly information
[   ]C_porcellus_Feb_2008_all_est.psl.gz.tbi2023-06-16 14:24 115KTabix index file
[   ]C_porcellus_Feb_2008_all_est.psl.gz2023-06-16 14:24 1.0MPSL (alignments) blat output file
[   ]C_porcellus_Feb_2008.2bit2023-06-16 14:24 676MSequence data in blat 2bit format
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