C. elegans Feb 2013 (WBcel235/ce11) genome assembly
The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.
Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.
Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.
The file named C_elegans_Feb_2013.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from C_elegans_Feb_2013.2bit sequence file using twoBitInfo.
Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.
![[ICO]](/styling/icons/blank.svg){kind=icon} | Name | Last modified | Size | Description |
|---|---|---|---|---|
![[PARENTDIR]](/styling/icons/glyphicon-circle-arrow-up.svg){kind=icon} | Parent Directory | - | ||
![[ ]](/styling/icons/glyphicon-file.svg){kind=icon} | C_elegans_Feb_2013.2bit | 2023-06-16 14:06 | 24M | Sequence data in blat 2bit format |
![[ ]](/icons/compressed.gif){kind=icon} | C_elegans_Feb_2013_ncbiRefSeq.bed.gz | 2023-06-16 14:06 | 1.7M | Annotation or junction file |
| C_elegans_Feb_2013_ncbiRefSeq.bed.gz.tbi | 2023-06-16 14:06 | 17K | Tabix index file |
| C_elegans_Feb_2013_refGene.bed.gz | 2023-06-16 14:06 | 1.9M | Data from UCSC refGene table |
| C_elegans_Feb_2013_refGene.bed.gz.tbi | 2023-06-16 14:06 | 16K | Tabix index file |
| annots.xml | 2023-06-16 14:06 | 1.1K | Annotation and data file list |
| ce11-blacklist.v2.bed.gz | 2023-06-16 14:06 | 964 | Annotation or junction file |
| ce11-blacklist.v2.bed.gz.tbi | 2023-06-16 14:06 | 1.3K | Tabix index file |
| genome.txt | 2023-06-16 14:06 | 99 | Chromosome lengths and assembly information |