Bos taurus (Oct 2011) cow (Baylor Btau_4.6.1/bosTau7) genome assembly

The files listed below are formatted for visualization in the Integrated Genome Browser, available from BioViz.org.

Annotation (bed) and alignment (psl) files (if available) were downloaded from the UCSC Genome Bioinformatics Table Browser. Each file is named for its corresponding table in the UCSC Genome database. See the annots.xml meta-data file in this directory for details.

Files with extension .gz were compressed and indexed using bgzip and tabix tools from htslib.org.

The file named B_taurus_Oct_2011.2bit contains sequence data and is from the UCSC Genome Bioinformatics Web site. To convert a .2bit to fasta, use twoBitToFa. The file genome.txt lists sequences and their sizes and was made from B_taurus_Oct_2011.2bit sequence file using twoBitInfo.

Both twoBitInfo and twoBitToFa are available from http://hgdownload.cse.ucsc.edu/admin/exe/.

	Name	Last modified	Size	Description
	Parent Directory		-
	annots.xml	2025-03-11 10:01	1.2K	Annotation and data file list
	B_taurus_Oct_2011_refGene.bed.gz.tbi	2023-06-16 13:40	125K	Tabix index file
	B_taurus_Oct_2011_all_mrna.psl.gz.tbi	2023-06-16 13:40	129K	Tabix index file
	genome.txt	2023-06-16 13:40	260K	Chromosome lengths and assembly information
	B_taurus_Oct_2011_all_est.psl.gz.tbi	2023-06-16 13:40	746K	Tabix index file
	B_taurus_Oct_2011_refGene.bed.gz	2023-06-16 13:40	894K	Data from UCSC refGene table
	B_taurus_Oct_2011_all_mrna.psl.gz	2023-06-16 13:40	1.5M	PSL (alignments) blat output file
	B_taurus_Oct_2011_all_est.psl.gz	2023-06-16 13:40	54M	PSL (alignments) blat output file