Sample	total_passed	total_failed	secondary_passed	secondary_failed	supplementary_passed	supplementary_failed	duplicates_passed	duplicates_failed	mapped_passed	mapped_failed	mapped_passed_pct	mapped_failed_pct	paired in sequencing_passed	paired in sequencing_failed	read1_passed	read1_failed	read2_passed	read2_failed	properly paired_passed	properly paired_failed	properly paired_passed_pct	properly paired_failed_pct	with itself and mate mapped_passed	with itself and mate mapped_failed	singletons_passed	singletons_failed	singletons_passed_pct	singletons_failed_pct	with mate mapped to a different chr_passed	with mate mapped to a different chr_failed	with mate mapped to a different chr (mapQ >= 5)_passed	with mate mapped to a different chr (mapQ >= 5)_failed	flagstat_total
Heinz-Ovary-Rep1-0hr-25C-unpol	64704303	0	15919288	0	0	0	0	0	64704303	0	100.0	nan	48785015	0	24397946	0	24387069	0	48769074	0	99.97	nan	48769074	0	15941	0	0.03	nan	0	0	0	0	64704303
Heinz-Ovary-Rep2-0hr-25C-unpol	46287014	0	8277467	0	0	0	0	0	46287014	0	100.0	nan	38009547	0	19005869	0	19003678	0	38001334	0	99.98	nan	38001334	0	8213	0	0.02	nan	0	0	0	0	46287014
Heinz-Ovary-Rep3-0hr-25C-unpol	55145935	0	5841064	0	0	0	0	0	55145935	0	100.0	nan	49304871	0	24657697	0	24647174	0	49286140	0	99.96	nan	49286140	0	18731	0	0.04	nan	0	0	0	0	55145935
Heinz-Rep1-0hr-25C-self	42594085	0	3686426	0	0	0	0	0	42594085	0	100.0	nan	38907659	0	19459562	0	19448097	0	38890476	0	99.96	nan	38890476	0	17183	0	0.04	nan	0	0	0	0	42594085
Heinz-Rep1-3hr-25C-self	51721698	0	3479627	0	0	0	0	0	51721698	0	100.0	nan	48242071	0	24123226	0	24118845	0	48225820	0	99.97	nan	48225820	0	16251	0	0.03	nan	0	0	0	0	51721698
Heinz-Rep1-3hr-37C-self	52009228	0	5037052	0	0	0	0	0	52009228	0	100.0	nan	46972176	0	23491797	0	23480379	0	46956630	0	99.97	nan	46956630	0	15546	0	0.03	nan	0	0	0	0	52009228
Heinz-Rep1-8hr-25C-self	23041126	0	1634226	0	0	0	0	0	23041126	0	100.0	nan	21406900	0	10707015	0	10699885	0	21397758	0	99.96	nan	21397758	0	9142	0	0.04	nan	0	0	0	0	23041126
Heinz-Rep1-8hr-37C-self	52737687	0	5348735	0	0	0	0	0	52737687	0	100.0	nan	47388952	0	23699483	0	23689469	0	47373584	0	99.97	nan	47373584	0	15368	0	0.03	nan	0	0	0	0	52737687
Heinz-Rep2-0hr-25C-self	51786860	0	3713232	0	0	0	0	0	51786860	0	100.0	nan	48073628	0	24042035	0	24031593	0	48058126	0	99.97	nan	48058126	0	15502	0	0.03	nan	0	0	0	0	51786860
Heinz-Rep2-3hr-25C-self	52063655	0	3216367	0	0	0	0	0	52063655	0	100.0	nan	48847288	0	24429270	0	24418018	0	48830986	0	99.97	nan	48830986	0	16302	0	0.03	nan	0	0	0	0	52063655
Heinz-Rep2-3hr-37C-self	55929304	0	4551036	0	0	0	0	0	55929304	0	100.0	nan	51378268	0	25696623	0	25681645	0	51356824	0	99.96	nan	51356824	0	21444	0	0.04	nan	0	0	0	0	55929304
Heinz-Rep2-8hr-25C-self	36422714	0	2470541	0	0	0	0	0	36422714	0	100.0	nan	33952173	0	16977864	0	16974309	0	33938308	0	99.96	nan	33938308	0	13865	0	0.04	nan	0	0	0	0	36422714
Heinz-Rep2-8hr-37C-self	54063908	0	5980113	0	0	0	0	0	54063908	0	100.0	nan	48083795	0	24046652	0	24037143	0	48066726	0	99.96	nan	48066726	0	17069	0	0.04	nan	0	0	0	0	54063908
Heinz-Rep3-0hr-25C-self	53375625	0	3448964	0	0	0	0	0	53375625	0	100.0	nan	49926661	0	24968820	0	24957841	0	49906038	0	99.96	nan	49906038	0	20623	0	0.04	nan	0	0	0	0	53375625
Heinz-Rep3-3hr-25C-self	48591201	0	4175609	0	0	0	0	0	48591201	0	100.0	nan	44415592	0	22208019	0	22207573	0	44404344	0	99.97	nan	44404344	0	11248	0	0.03	nan	0	0	0	0	48591201
Heinz-Rep3-3hr-37C-self	53115198	0	4955905	0	0	0	0	0	53115198	0	100.0	nan	48159293	0	24084289	0	24075004	0	48145714	0	99.97	nan	48145714	0	13579	0	0.03	nan	0	0	0	0	53115198
Heinz-Rep3-8hr-25C-self	50912468	0	4096396	0	0	0	0	0	50912468	0	100.0	nan	46816072	0	23412423	0	23403649	0	46801782	0	99.97	nan	46801782	0	14290	0	0.03	nan	0	0	0	0	50912468
Heinz-Rep3-8hr-37C-self	54293211	0	5263288	0	0	0	0	0	54293211	0	100.0	nan	49029923	0	24520801	0	24509122	0	49013434	0	99.97	nan	49013434	0	16489	0	0.03	nan	0	0	0	0	54293211
Malintka-Rep1-0hr-25C-self	53605939	0	5105117	0	0	0	0	0	53605939	0	100.0	nan	48500822	0	24255704	0	24245118	0	48485726	0	99.97	nan	48485726	0	15096	0	0.03	nan	0	0	0	0	53605939
Malintka-Rep1-3hr-25C-self	29931049	0	2424735	0	0	0	0	0	29931049	0	100.0	nan	27506314	0	13755034	0	13751280	0	27500838	0	99.98	nan	27500838	0	5476	0	0.02	nan	0	0	0	0	29931049
Malintka-Rep1-3hr-37C-self	51870280	0	3852742	0	0	0	0	0	51870280	0	100.0	nan	48017538	0	24013931	0	24003607	0	48004364	0	99.97	nan	48004364	0	13174	0	0.03	nan	0	0	0	0	51870280
Malintka-Rep1-8hr-25C-self	12456968	0	901083	0	0	0	0	0	12456968	0	100.0	nan	11555885	0	5778230	0	5777655	0	11554484	0	99.99	nan	11554484	0	1401	0	0.01	nan	0	0	0	0	12456968
Malintka-Rep1-8hr-37C-self	51341110	0	4451446	0	0	0	0	0	51341110	0	100.0	nan	46889664	0	23451328	0	23438336	0	46873060	0	99.96	nan	46873060	0	16604	0	0.04	nan	0	0	0	0	51341110
Malintka-Rep2-0hr-25C-self	54016097	0	3704455	0	0	0	0	0	54016097	0	100.0	nan	50311642	0	25157506	0	25154136	0	50307722	0	99.99	nan	50307722	0	3920	0	0.01	nan	0	0	0	0	54016097
Malintka-Rep2-3hr-25C-self	48207212	0	4383928	0	0	0	0	0	48207212	0	100.0	nan	43823284	0	21913902	0	21909382	0	43817834	0	99.99	nan	43817834	0	5450	0	0.01	nan	0	0	0	0	48207212
Malintka-Rep2-3hr-37C-self	45762316	0	3800118	0	0	0	0	0	45762316	0	100.0	nan	41962198	0	20986690	0	20975508	0	41947692	0	99.97	nan	41947692	0	14506	0	0.03	nan	0	0	0	0	45762316
Malintka-Rep2-8hr-25C-self	48925534	0	3797082	0	0	0	0	0	48925534	0	100.0	nan	45128452	0	22565628	0	22562824	0	45123582	0	99.99	nan	45123582	0	4870	0	0.01	nan	0	0	0	0	48925534
Malintka-Rep2-8hr-37C-self	56534066	0	7730431	0	0	0	0	0	56534066	0	100.0	nan	48803635	0	24405830	0	24397805	0	48787332	0	99.97	nan	48787332	0	16303	0	0.03	nan	0	0	0	0	56534066
Malintka-Rep3-0hr-25C-self	49637686	0	4101537	0	0	0	0	0	49637686	0	100.0	nan	45536149	0	22771263	0	22764886	0	45526456	0	99.98	nan	45526456	0	9693	0	0.02	nan	0	0	0	0	49637686
Malintka-Rep3-3hr-25C-self	53859580	0	4710902	0	0	0	0	0	53859580	0	100.0	nan	49148678	0	24580074	0	24568604	0	49132314	0	99.97	nan	49132314	0	16364	0	0.03	nan	0	0	0	0	53859580
Malintka-Rep3-3hr-37C-self	30368053	0	2790662	0	0	0	0	0	30368053	0	100.0	nan	27577391	0	13791255	0	13786136	0	27569112	0	99.97	nan	27569112	0	8279	0	0.03	nan	0	0	0	0	30368053
Malintka-Rep3-8hr-25C-self	45905451	0	3411754	0	0	0	0	0	45905451	0	100.0	nan	42493697	0	21251084	0	21242613	0	42480880	0	99.97	nan	42480880	0	12817	0	0.03	nan	0	0	0	0	45905451
Malintka-Rep3-8hr-37C-self	57988097	0	5358337	0	0	0	0	0	57988097	0	100.0	nan	52629760	0	26325280	0	26304480	0	52597866	0	99.94	nan	52597866	0	31894	0	0.06	nan	0	0	0	0	57988097
Nagcarlang-Rep1-0hr-25C-self	43378773	0	3689657	0	0	0	0	0	43378773	0	100.0	nan	39689116	0	19848459	0	19840657	0	39676904	0	99.97	nan	39676904	0	12212	0	0.03	nan	0	0	0	0	43378773
Nagcarlang-Rep1-3hr-25C-self	48455320	0	3316140	0	0	0	0	0	48455320	0	100.0	nan	45139180	0	22574198	0	22564982	0	45126266	0	99.97	nan	45126266	0	12914	0	0.03	nan	0	0	0	0	48455320
Nagcarlang-Rep1-3hr-37C-self	33558508	0	2458623	0	0	0	0	0	33558508	0	100.0	nan	31099885	0	15550717	0	15549168	0	31096146	0	99.99	nan	31096146	0	3739	0	0.01	nan	0	0	0	0	33558508
Nagcarlang-Rep1-8hr-25C-self	48492572	0	3623164	0	0	0	0	0	48492572	0	100.0	nan	44869408	0	22435687	0	22433721	0	44863512	0	99.99	nan	44863512	0	5896	0	0.01	nan	0	0	0	0	48492572
Nagcarlang-Rep1-8hr-37C-self	49719547	0	3759491	0	0	0	0	0	49719547	0	100.0	nan	45960056	0	22983137	0	22976919	0	45948480	0	99.97	nan	45948480	0	11576	0	0.03	nan	0	0	0	0	49719547
Nagcarlang-Rep2-0hr-25C-self	46319695	0	6073547	0	0	0	0	0	46319695	0	100.0	nan	40246148	0	20126351	0	20119797	0	40234984	0	99.97	nan	40234984	0	11164	0	0.03	nan	0	0	0	0	46319695
Nagcarlang-Rep2-3hr-25C-self	29096387	0	4388818	0	0	0	0	0	29096387	0	100.0	nan	24707569	0	12356118	0	12351451	0	24699536	0	99.97	nan	24699536	0	8033	0	0.03	nan	0	0	0	0	29096387
Nagcarlang-Rep2-3hr-37C-self	49771506	0	3997424	0	0	0	0	0	49771506	0	100.0	nan	45774082	0	22890019	0	22884063	0	45763154	0	99.98	nan	45763154	0	10928	0	0.02	nan	0	0	0	0	49771506
Nagcarlang-Rep2-8hr-25C-self	45851191	0	3270740	0	0	0	0	0	45851191	0	100.0	nan	42580451	0	21295104	0	21285347	0	42565602	0	99.97	nan	42565602	0	14849	0	0.03	nan	0	0	0	0	45851191
Nagcarlang-Rep2-8hr-37C-self	55720993	0	4829330	0	0	0	0	0	55720993	0	100.0	nan	50891663	0	25454594	0	25437069	0	50868222	0	99.95	nan	50868222	0	23441	0	0.05	nan	0	0	0	0	55720993
Nagcarlang-Rep3-0hr-25C-self	36295718	0	2263500	0	0	0	0	0	36295718	0	100.0	nan	34032218	0	17019857	0	17012361	0	34021560	0	99.97	nan	34021560	0	10658	0	0.03	nan	0	0	0	0	36295718
Nagcarlang-Rep3-3hr-25C-self	55205342	0	3546638	0	0	0	0	0	55205342	0	100.0	nan	51658704	0	25837127	0	25821577	0	51638224	0	99.96	nan	51638224	0	20480	0	0.04	nan	0	0	0	0	55205342
Nagcarlang-Rep3-3hr-37C-self	56674303	0	3292757	0	0	0	0	0	56674303	0	100.0	nan	53381546	0	26699929	0	26681617	0	53357718	0	99.96	nan	53357718	0	23828	0	0.04	nan	0	0	0	0	56674303
Nagcarlang-Rep3-8hr-25C-self	53632488	0	4320362	0	0	0	0	0	53632488	0	100.0	nan	49312126	0	24661575	0	24650551	0	49296398	0	99.97	nan	49296398	0	15728	0	0.03	nan	0	0	0	0	53632488
Nagcarlang-Rep3-8hr-37C-self	52811242	0	3394715	0	0	0	0	0	52811242	0	100.0	nan	49416527	0	24717217	0	24699310	0	49393696	0	99.95	nan	49393696	0	22831	0	0.05	nan	0	0	0	0	52811242
Tamaulipas-Rep1-0hr-25C-self	19641938	0	1216887	0	0	0	0	0	19641938	0	100.0	nan	18425051	0	9214213	0	9210838	0	18419706	0	99.97	nan	18419706	0	5345	0	0.03	nan	0	0	0	0	19641938
Tamaulipas-Rep1-3hr-25C-self	55592238	0	3513749	0	0	0	0	0	55592238	0	100.0	nan	52078489	0	26047589	0	26030900	0	52056408	0	99.96	nan	52056408	0	22081	0	0.04	nan	0	0	0	0	55592238
Tamaulipas-Rep1-3hr-37C-self	48292615	0	4023417	0	0	0	0	0	48292615	0	100.0	nan	44269198	0	22138389	0	22130809	0	44256336	0	99.97	nan	44256336	0	12862	0	0.03	nan	0	0	0	0	48292615
Tamaulipas-Rep1-8hr-25C-self	50409481	0	3920874	0	0	0	0	0	50409481	0	100.0	nan	46488607	0	23248387	0	23240220	0	46475218	0	99.97	nan	46475218	0	13389	0	0.03	nan	0	0	0	0	50409481
Tamaulipas-Rep1-8hr-37C-self	48732206	0	3348682	0	0	0	0	0	48732206	0	100.0	nan	45383524	0	22695136	0	22688388	0	45371906	0	99.97	nan	45371906	0	11618	0	0.03	nan	0	0	0	0	48732206
Tamaulipas-Rep2-0hr-25C-self	47317135	0	3135407	0	0	0	0	0	47317135	0	100.0	nan	44181728	0	22095024	0	22086704	0	44167478	0	99.97	nan	44167478	0	14250	0	0.03	nan	0	0	0	0	47317135
Tamaulipas-Rep2-3hr-25C-self	49290061	0	3387681	0	0	0	0	0	49290061	0	100.0	nan	45902380	0	22954776	0	22947604	0	45888816	0	99.97	nan	45888816	0	13564	0	0.03	nan	0	0	0	0	49290061
Tamaulipas-Rep2-3hr-37C-self	46556827	0	3633067	0	0	0	0	0	46556827	0	100.0	nan	42923760	0	21462739	0	21461021	0	42916786	0	99.98	nan	42916786	0	6974	0	0.02	nan	0	0	0	0	46556827
Tamaulipas-Rep2-8hr-25C-self	131322918	0	73479053	0	0	0	0	0	131322918	0	100.0	nan	57843865	0	28940560	0	28903305	0	57801280	0	99.93	nan	57801280	0	42585	0	0.07	nan	0	0	0	0	131322918
Tamaulipas-Rep2-8hr-37C-self	48569191	0	3180406	0	0	0	0	0	48569191	0	100.0	nan	45388785	0	22700670	0	22688115	0	45371538	0	99.96	nan	45371538	0	17247	0	0.04	nan	0	0	0	0	48569191
Tamaulipas-Rep3-0hr-25C-self	41081007	0	2668785	0	0	0	0	0	41081007	0	100.0	nan	38412222	0	19206323	0	19205899	0	38406536	0	99.99	nan	38406536	0	5686	0	0.01	nan	0	0	0	0	41081007
Tamaulipas-Rep3-3hr-25C-self	42791343	0	2426317	0	0	0	0	0	42791343	0	100.0	nan	40365026	0	20181897	0	20183129	0	40352686	0	99.97	nan	40352686	0	12340	0	0.03	nan	0	0	0	0	42791343
Tamaulipas-Rep3-3hr-37C-self	50231892	0	4114067	0	0	0	0	0	50231892	0	100.0	nan	46117825	0	23059400	0	23058425	0	46108744	0	99.98	nan	46108744	0	9081	0	0.02	nan	0	0	0	0	50231892
Tamaulipas-Rep3-8hr-25C-self	46519929	0	2886628	0	0	0	0	0	46519929	0	100.0	nan	43633301	0	21817709	0	21815592	0	43624978	0	99.98	nan	43624978	0	8323	0	0.02	nan	0	0	0	0	46519929
Tamaulipas-Rep3-8hr-37C-self	44676608	0	3265001	0	0	0	0	0	44676608	0	100.0	nan	41411607	0	20706906	0	20704701	0	41405186	0	99.98	nan	41405186	0	6421	0	0.02	nan	0	0	0	0	44676608