# This is one of three components: callRunSamtoolsMerge.sh, runSamtoolsMerge.pbs, and SampleRuns.txt
# all three of these files work together to merge the correct bam files for each sample.
# SRR.bam SampleCode
../bam/SRR645795.bam	Eth0hRep1
../bam/SRR645796.bam	Eth0hRep1
../bam/SRR645797.bam	Eth0hRep1
../bam/SRR645798.bam	Eth0hRep2
../bam/SRR645799.bam	Eth0hRep2
../bam/SRR645800.bam	Eth0.25hRep1
../bam/SRR645801.bam	Eth0.25hRep1
../bam/SRR645802.bam	Eth0.25hRep2
../bam/SRR645803.bam	Eth0.25hRep2
../bam/SRR645804.bam	Eth0.5hRep1
../bam/SRR645805.bam	Eth0.5hRep1
../bam/SRR645806.bam	Eth0.5hRep1
../bam/SRR645807.bam	Eth0.5hRep1
../bam/SRR645808.bam	Eth0.5hRep2
../bam/SRR645809.bam	Eth0.5hRep2
../bam/SRR645810.bam	Eth0.5hRep2
../bam/SRR645811.bam	Eth0.5hRep2
../bam/SRR645812.bam	Eth0.5hRep2
../bam/SRR645813.bam	Eth1hRep1
../bam/SRR645814.bam	Eth1hRep1
../bam/SRR645815.bam	Eth1hRep2
../bam/SRR645816.bam	Eth1hRep2
../bam/SRR645817.bam	Eth1hRep2
../bam/SRR646228.bam	Eth4hRep1
../bam/SRR646229.bam	Eth4hRep1
../bam/SRR646230.bam	Eth4hRep1
../bam/SRR646231.bam	Eth4hRep1
../bam/SRR646232.bam	Eth4hRep1
../bam/SRR646233.bam	Eth4hRep1
../bam/SRR646234.bam	Eth4hRep1
../bam/SRR646235.bam	Eth4hRep2
../bam/SRR646236.bam	Eth4hRep2
../bam/SRR646237.bam	Eth4hRep2
../bam/SRR646238.bam	Eth4hRep2
../bam/SRR646239.bam	Eth12hRep1
../bam/SRR646240.bam	Eth12hRep1
../bam/SRR646244.bam	Eth12hRep1
../bam/SRR646245.bam	Eth12hRep1
../bam/SRR646246.bam	Eth12hRep1
../bam/SRR646241.bam	Eth24hRep1
../bam/SRR646242.bam	Eth24hRep1
../bam/SRR646243.bam	Eth24hRep1
../bam/SRR647585.bam	ColRep1
../bam/SRR647587.bam	ColRep1
../bam/SRR647601.bam	ColRep2
../bam/SRR647614.bam	ColRep2
../bam/SRR647665.bam	EinRep1
../bam/SRR647670.bam	EinRep1
../bam/SRR647671.bam	EinRep2
../bam/SRR647672.bam	EinRep2